Scientific program
| |
Friday, June 24 |
Saturday, June 25 |
Sunday, June 26 |
| |
Reconstructions & Pathogens |
Human metabolism & Recon. methods |
Analysis Methods & Evolution |
| 8:30-9:00 |
Registration
Coffee/Tea
|
Coffee/Tea |
Coffee/Tea |
| 9:00-9:10 |
Welcome (Thiele) |
Welcome (Papin) |
Welcome (Price) |
| 9:10-9:50 |
Bernhard Palsson |
H.G. Holzhutter |
Stefan Schuster |
| 9:50-10:30 |
Jens Nielsen |
Eytan Ruppin |
Ronan Fleming |
| 10:30-10:50 |
Break/Snacks |
Break/Snacks |
Break/Snacks |
| 10:50-11:05 |
David Baumler |
Charles Haggart |
Ronny Feuer |
| 11:05-11:20 |
Adam Feist |
Dong-Yup Lee |
Hong Yang |
| 11:20-11:35 |
Dennis Vitkup |
Keren Yizhak |
E. Simeondis |
| 11:35-11:50 |
Neil Swainston |
M. Latendresse |
K. Salehi Ashtiani |
| 12:00-13:30 |
Lunch |
Lunch |
Lunch |
| 13:30-14:10 |
Eivind Almaas |
Chris Henry |
Balazs Papp |
| 14:10-14:50 |
Jason Papin |
Uwe Sauer |
Daniel Segre |
| 14:50-15:10 |
Break/Snacks |
Break/Snacks |
H. Haraldsdóttir |
| 15:10-15:50 |
Ines Thiele |
Costas Maranas |
End (Thiele) |
| 15:50-16:05 |
Carl Song |
Nathan Price (15:50-16:30) |
|
| 16:05-16:20 |
R. Osterhout |
|
|
| 16:30-18:30 |
Welcome Reception and Poster Session |
Poster Session (16:30-18:00) |
|
| 18:30-20:30 |
|
Dinner (optional) |
|
"Modeling of Yersinia pestis reconstructed genome-scale metabolism during stress",
Eivind Almaas, Norwegian University of Science and Technology Trondheim, Norway
“Generation of A Metabolic Network Representing the Ancestral Core of the Family Enterobacteriaceae”,
David Baumler, University of Wisconsin-Madison, United States
“Experimental and COBRA Characterization of Geobacter metallireducens GS-15 using an Updated Genome-scale Reconstruction”,
Adam Feist, University of California, San Diego, United States
“Model-based Analysis of Adaptive Evolution”,
R. Feuer, University of Stuttgart, Germany
"A variational approach to the solution of stochiometric polynomial systems",
Ronan Fleming, University of Iceland, Iceland
“Genome-scale modeling of human cardiac metabolism in health and disease”,
Charles Haggart, University of Virginia, United States
"Quantitative Assignment of Reaction Directionality in a Multicompartmental Human Metabolic Reconstruction Recon 1",
Hulda Haraldsdóttir, University of Iceland, Iceland
"Insights from the Reconstruction of 3500 Metabolic Models",
Christopher Henry, Argonne National Laboratory, USA
“Functional analyses of metabolic networks using flux-balance methods”,
Hermann-Georg Holzhütter, Charité - Universitätsmedizin Berlin, Germany
“Multiple Gap-Filling of Flux-Balance Models”,
M. Latendresse, SRI International, United States
“In silico modeling and characterization of hESC metabolism under varying nutrient environments”,
Dong-Yup Lee, National University of Singapore, Singapore
“Reconstruction of Genome-Scale Metabolic and Isotope Mapping Models”,
Costas Maranas, Pennsylvania State University, USA
"Application of Genome-Scale Metabolic Models in Industrial Biotechnology",
Jens Nielsen, Chalmers University of Technology, Sweden
“Model-driven metabolic engineering of Escherichia coli for direct production of 1,4-butanediol”,
R. Osterhout, Genomatica, United States
“History of Making Prediction with COBRA Methods”,
Bernhard Palsson, University of California, San Diego, USA
"Network analysis of human pathogens",
Jason Papin, University of Virginia, USA
"An integrated approach to characterize genetic interaction networks in yeast metabolism",
Balázs Papp, Hungarian Academy of Sciences, Hungary
“Integration of regulatory and metabolic networks using Probabilistic
Regulation of Metabolism (PROM)”,
Nathan Price, University of Illinois, USA
"Predicting selective synthetic lethal drug target combinations in cancer through metabolic modeling",
Eytan Ruppin, Tel Aviv University, Israel
“Analyses of Chlamydomonas reinhardtii Metabolic Network Model Suggest Constrained Conservations Over Long Evolutionary Distances”,
K. Salehi-Ashtiani, New York University Abu Dhabi, UAE, and New York University, New York, United States
"Multidimensional optimality in microbial metabolism",
Uwe Sauer, Eidgenssische Technische Hochschule Zürich, Switzerland
"Elementary-modes analysis. Insightful examples from bacterial, fungal, plant and animal metabolisms",
Stefan Schuster, Friedrich-Schiller-University Jena, Germany
“From genome-scale to ecosystem-level metabolic network models",
Daniel Segre', Boston University, USA
“Chasing the flux: selecting target pathways through flux analysis of carbon metabolism”,
E. Simeonidis, Luxembourg Centre for Systems Biomedicine, Luxembourg
“A novel approach to in silico gene-deletion study in Apicomplexan parasites”,
Carl Song, University of Toronto, Canada
“The Subliminal Toolbox: automating steps in the reconstruction of metabolic networks”,
Neil Swainston, University of Manchester, United Kingdom
TBA,
Ines Thiele, University of Iceland, Iceland
“Global probabilistic reconstruction and analysis of metabolic networks”,
Dennis Vitkup, Columbia University, United States
“Cost Efficiency Model for Network-Wide Quantitative Determination of Enzyme Activity”,
Hong Yang, University of Minnesota, United States
“Towards the computational prediction of drug targets acting to reverse metabolic alterations in ageing”,
Keren Yizhak, Tel Aviv University, Israel